STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115591544GTP cyclohydrolase 1-like. (267 aa)    
Predicted Functional Partners:
ENSSAUP00010047251
annotation not available
    
 0.937
ENSSAUP00010046194
annotation not available
  
 
  0.903
LOC115587574
Thioredoxin domain-containing protein 3 homolog.
   
 0.881
itpa
Inosine triphosphatase.
  
 
 0.876
pts
6-pyruvoyltetrahydropterin synthase.
  
 
 0.856
ENSSAUP00010046198
annotation not available
  
 
  0.850
vta1
Vesicle trafficking 1.
   
   0.824
nudt15
Nudix hydrolase 15.
  
 
 0.809
nme3
NME/NM23 nucleoside diphosphate kinase 3.
   
 0.778
LOC115571334
Nucleoside diphosphate kinase A1-like.
   
 0.778
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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