dusp12 protein (Sparus aurata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dusp12

Dual specificity phosphatase 12. (299 aa)

Predicted Functional Partners:

ENSSAUP00010003004

0.668

dntt

0.668

ENSSAUP00010024945

0.665

LOC115570652

0.665

LOC115597102

0.665

LOC115584378

0.633

LOC115583853

0.633

ENSSAUP00010027501

0.630

stk38

0.621

stk38l

0.621

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSAUP00010003004	dusp12	ENSSAUP00010003004	ENSSAUP00010024814	Polymerase (DNA directed), mu.	Dual specificity phosphatase 12.	0.668
ENSSAUP00010024945	ENSSAUP00010027501	ENSSAUP00010024945	ENSSAUP00010027501	Mitogen-activated protein kinase 10.	Mitogen-activated protein kinase 9.	0.982
ENSSAUP00010024945	LOC115570652	ENSSAUP00010024945	ENSSAUP00010061515	Mitogen-activated protein kinase 10.	Mitogen-activated protein kinase 8.	0.791
ENSSAUP00010024945	LOC115597102	ENSSAUP00010024945	ENSSAUP00010062435	Mitogen-activated protein kinase 10.	Mitogen-activated protein kinase 8-like.	0.792
ENSSAUP00010024945	dusp12	ENSSAUP00010024945	ENSSAUP00010024814	Mitogen-activated protein kinase 10.	Dual specificity phosphatase 12.	0.665
ENSSAUP00010027501	ENSSAUP00010024945	ENSSAUP00010027501	ENSSAUP00010024945	Mitogen-activated protein kinase 9.	Mitogen-activated protein kinase 10.	0.982
ENSSAUP00010027501	LOC115570652	ENSSAUP00010027501	ENSSAUP00010061515	Mitogen-activated protein kinase 9.	Mitogen-activated protein kinase 8.	0.978
ENSSAUP00010027501	LOC115597102	ENSSAUP00010027501	ENSSAUP00010062435	Mitogen-activated protein kinase 9.	Mitogen-activated protein kinase 8-like.	0.978
ENSSAUP00010027501	dusp12	ENSSAUP00010027501	ENSSAUP00010024814	Mitogen-activated protein kinase 9.	Dual specificity phosphatase 12.	0.630
LOC115570652	ENSSAUP00010024945	ENSSAUP00010061515	ENSSAUP00010024945	Mitogen-activated protein kinase 8.	Mitogen-activated protein kinase 10.	0.791
LOC115570652	ENSSAUP00010027501	ENSSAUP00010061515	ENSSAUP00010027501	Mitogen-activated protein kinase 8.	Mitogen-activated protein kinase 9.	0.978
LOC115570652	dusp12	ENSSAUP00010061515	ENSSAUP00010024814	Mitogen-activated protein kinase 8.	Dual specificity phosphatase 12.	0.665
LOC115583853	LOC115584378	ENSSAUP00010063193	ENSSAUP00010035984	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.	0.880
LOC115583853	dusp12	ENSSAUP00010063193	ENSSAUP00010024814	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.	Dual specificity phosphatase 12.	0.633
LOC115584378	LOC115583853	ENSSAUP00010035984	ENSSAUP00010063193	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.	0.880
LOC115584378	dusp12	ENSSAUP00010035984	ENSSAUP00010024814	Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.	Dual specificity phosphatase 12.	0.633
LOC115597102	ENSSAUP00010024945	ENSSAUP00010062435	ENSSAUP00010024945	Mitogen-activated protein kinase 8-like.	Mitogen-activated protein kinase 10.	0.792
LOC115597102	ENSSAUP00010027501	ENSSAUP00010062435	ENSSAUP00010027501	Mitogen-activated protein kinase 8-like.	Mitogen-activated protein kinase 9.	0.978
LOC115597102	dusp12	ENSSAUP00010062435	ENSSAUP00010024814	Mitogen-activated protein kinase 8-like.	Dual specificity phosphatase 12.	0.665
dntt	dusp12	ENSSAUP00010019717	ENSSAUP00010024814	DNA nucleotidylexotransferase.	Dual specificity phosphatase 12.	0.668