STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
compCartilage oligomeric matrix protein. (747 aa)    
Predicted Functional Partners:
ENSSAUP00010045830
Integrin, beta 4.
   
 0.882
itgb5
Integrin subunit beta 5.
    
 0.876
ENSSAUP00010053420
Integrin, beta 6.
    
 0.874
LOC115572800
Integrin beta-1-like.
    
  0.873
itgb1
Integrin subunit beta 1.
    
  0.873
itgb8
Integrin subunit beta 8.
    
 0.867
cd36
CD36 molecule.
    
 0.866
ITGA7
Integrin subunit alpha 7.
    
 0.862
LOC115584013
Syndecan-4-like.
    
  0.860
itga4
Integrin subunit alpha 4.
    
 0.860
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.