STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smim7Small integral membrane protein 7. (95 aa)    
Predicted Functional Partners:
cog8
Component of oligomeric golgi complex 8.
   
 0.983
cog3
Component of oligomeric golgi complex 3.
    
 0.982
cog6
Component of oligomeric golgi complex 6.
   
 0.981
cog2
Component of oligomeric golgi complex 2.
   
 0.979
cog1
Component of oligomeric golgi complex 1.
    
 0.977
COG5
Component of oligomeric golgi complex 5.
    
 0.977
cog7
Component of oligomeric golgi complex 7.
    
 0.977
stx5
Syntaxin 5.
    
 0.870
scfd1
Sec1 family domain containing 1.
    
 
 0.842
vps53
VPS53 subunit of GARP complex.
   
 
 0.819
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.