STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010025988Retinal homeobox gene 3. (286 aa)    
Predicted Functional Partners:
LOC115579640
LIM domain-binding protein 1.
    
 0.584
ldb2
LIM domain binding 2.
    
 0.584
LOC115596618
LIM domain-binding protein 1-A-like.
    
 0.584
ENSSAUP00010000023
annotation not available
    
 0.561
SRF
Serum response factor.
    
 0.561
cplx3
Complexin 3.
     
 0.554
tpk1
Thiamin pyrophosphokinase 1.
    
  0.532
LHX3
LIM homeobox 3.
   
0.480
lhx4
LIM homeobox 4.
   
0.480
LOC115580937
Factor in the germline alpha-like.
   
 0.466
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.