STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dtlDenticleless E3 ubiquitin protein ligase homolog. (667 aa)    
Predicted Functional Partners:
ddb1
Damage specific DNA binding protein 1.
    
 0.998
pcna
Proliferating cell nuclear antigen.
   
 0.991
rbx1
Ring-box 1.
    
 0.986
ENSSAUP00010030038
Chromatin licensing and DNA replication factor 1.
   
 
 0.978
ENSSAUP00010000820
Cullin 4A.
    
 0.970
ENSSAUP00010043101
Cullin 4B.
    
 0.970
cdc6
Cell division cycle 6.
   
  
 0.961
wdhd1
WD repeat and HMG-box DNA binding protein 1.
   
  
 0.960
ENSSAUP00010059421
Polymerase (DNA directed), epsilon.
   
 
 0.934
ENSSAUP00010002437
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
  
 0.932
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.