STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115572754Potassium voltage-gated channel subfamily B member 2-like. (1125 aa)    
Predicted Functional Partners:
ENSSAUP00010055989
SHANK-associated RH domain interacting protein.
    
 0.985
LOC115569683
ranBP-type and C3HC4-type zinc finger-containing protein 1.
   
 0.970
rbck1
RANBP2-type and C3HC4-type zinc finger containing 1.
   
 0.970
otulin
OTU deubiquitinase with linear linkage specificity.
    
 0.967
ENSSAUP00010039397
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.959
ENSSAUP00010062713
Ribosomal protein S27a.
   
 0.915
ENSSAUP00010057066
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.911
LOC115594258
Inhibitor of apoptosis protein-like.
    
 0.877
xiap
X-linked inhibitor of apoptosis.
    
 0.870
LOC115582990
Inhibitor of nuclear factor kappa-B kinase subunit epsilon-like.
    
 0.867
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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