STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rec8REC8 meiotic recombination protein. (576 aa)    
Predicted Functional Partners:
espl1
Extra spindle pole bodies like 1, separase.
   
 0.957
smc3
Structural maintenance of chromosomes 3.
   
 0.953
ENSSAUP00010005171
Structural maintenance of chromosomes 1B.
   
 0.940
smc1a
Structural maintenance of chromosomes 1A.
   
 0.936
RBM20
RNA binding motif protein 20.
   
 0.930
pds5a
PDS5 cohesin associated factor A.
   
 0.922
pds5b
PDS5 cohesin associated factor B.
   
 0.922
nipbl
NIPBL cohesin loading factor.
   
 0.912
LOC115592601
nipped-B-like protein B.
   
 0.912
smc5
Structural maintenance of chromosomes 5.
   
 0.906
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.