STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010030511annotation not available (426 aa)    
Predicted Functional Partners:
vps33b
VPS33B late endosome and lysosome associated.
   
 
 0.972
vps33a
VPS33A core subunit of CORVET and HOPS complexes.
   
 
 0.942
vps16
VPS16 core subunit of CORVET and HOPS complexes.
   
  
 0.741
galnt16
Polypeptide N-acetylgalactosaminyltransferase 16.
   
 
 0.622
vps45
Vacuolar protein sorting 45 homolog.
   
  
 0.584
vps11
VPS11 core subunit of CORVET and HOPS complexes.
   
  
 0.578
LOC115565816
Rab11 family-interacting protein 1-like.
   
  
 0.544
vps18
VPS18 core subunit of CORVET and HOPS complexes.
      
 0.523
cog7
Component of oligomeric golgi complex 7.
     
 0.503
cog6
Component of oligomeric golgi complex 6.
   
 
 0.483
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.