STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115594572Ras-related protein Rab-38-like. (218 aa)    
Predicted Functional Partners:
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.763
ENSSAUP00010003729
CHM Rab escort protein.
    
 0.745
ENSSAUP00010008542
Ankyrin repeat domain 27 (VPS9 domain).
    
 
 0.742
gak
Cyclin G associated kinase.
    
 
 0.741
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.672
hps1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
     
 0.615
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
     
 0.603
ENSSAUP00010013597
GDP dissociation inhibitor 1.
    
 0.593
LOC115595158
Rab GDP dissociation inhibitor beta-like.
    
 0.593
ENSSAUP00010064433
Zgc:112334.
    
 0.593
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.