STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thoc5THO complex 5. (687 aa)    
Predicted Functional Partners:
ENSSAUP00010014301
THO complex 7.
   
 0.999
thoc1
THO complex 1.
   
 0.999
thoc3
THO complex 3.
    
 0.998
ENSSAUP00010066011
THO complex 2.
   
 0.998
thoc6
THO complex 6.
   
 0.995
ALYREF
Aly/REF export factor.
   
 0.984
ENSSAUP00010037084
Zinc finger CCCH-type containing 13.
   
 0.977
LOC115591047
THO complex subunit 4-like.
   
 0.976
ENSSAUP00010024071
annotation not available
   
 0.971
DDX39A
ATP-dependent RNA helicase DDX39A.
   
 0.971
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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