STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctifCap binding complex dependent translation initiation factor. (716 aa)    
Predicted Functional Partners:
LOC115583406
ATP-dependent RNA helicase DDX19B.
    
   0.891
slbp
Stem-loop binding protein.
    
 
 0.861
LOC115594658
Uncharacterized LOC115594658.
    
 
 0.860
LOC115584329
ATP-dependent RNA helicase DDX19A-like.
    
 
 0.594
NCBP1
Nuclear cap binding protein subunit 1.
      
 0.554
ENSSAUP00010020885
Thioredoxin-like 1.
      
 0.515
dym
Dymeclin.
      
 0.515
nars1
asparaginyl-tRNA synthetase 1.
      
 0.511
acaa2
acetyl-CoA acyltransferase 2.
      
 0.506
ENSSAUP00010047810
annotation not available
      
 0.499
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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