STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smad7SMAD family member 7. (376 aa)    
Predicted Functional Partners:
SMURF2
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.953
LOC115575625
E3 ubiquitin-protein ligase SMURF2.
    
 0.953
smurf1
SMAD specific E3 ubiquitin protein ligase 1.
    
 0.953
yap1
Yes associated protein 1.
    
 0.941
smad1
SMAD family member 1.
   
0.902
smad9
SMAD family member 9.
   
0.902
LOC115569095
Mothers against decapentaplegic homolog 5.
   
0.902
ENSSAUP00010045086
Transforming growth factor, beta receptor 1 b.
   
 0.862
LOC115580406
Mothers against decapentaplegic homolog 3.
   
0.849
smad3
SMAD family member 3.
   
0.849
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.