STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115578929Serine/threonine-protein kinase pdik1l. (341 aa)    
Predicted Functional Partners:
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.917
pik3r4
Phosphoinositide-3-kinase regulatory subunit 4.
    
 0.917
becn1
Beclin 1.
    
 0.917
atg13
Autophagy related 13.
   
 0.916
rb1cc1
RB1 inducible coiled-coil 1.
    
 0.913
atg101
Autophagy related 101.
    
 0.897
ATG2B
Autophagy related 2B.
   
 0.884
ENSSAUP00010050264
Autophagy related 2A.
   
 0.884
ENSSAUP00010003317
ATG9 autophagy related 9 homolog A (S. cerevisiae).
   
 0.866
ENSSAUP00010005813
Autophagy related 9B.
   
 0.866
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.