STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115567961Nuclear receptor subfamily 2 group F member 5. (422 aa)    
Predicted Functional Partners:
ncor1
Nuclear receptor corepressor 1.
    
 0.762
ENSSAUP00010000647
Nuclear receptor corepressor 2.
    
 0.721
med1
Mediator complex subunit 1.
    
  0.711
ENSSAUP00010050508
Heat shock protein 90, beta (grp94), member 1.
   
 0.647
ENSSAUP00010067168
annotation not available
    
  0.589
med14
Mediator complex subunit 14.
    
  0.578
med17
Mediator complex subunit 17.
    
  0.569
rpl9
Ribosomal protein L9.
    
  0.565
ppargc1a
PPARG coactivator 1 alpha.
    
 0.559
ENSSAUP00010004213
Mediator complex subunit 4.
    
  0.551
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.