STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115585747Sodium- and chloride-dependent GABA transporter 1-like. (716 aa)    
Predicted Functional Partners:
slc1a1
Solute carrier family 1 member 1.
    
 0.619
slc6a3
Solute carrier family 6 member 3.
  
  
 
0.544
slc6a2
Solute carrier family 6 member 2.
  
  
 
0.539
ENSSAUP00010056171
Solute carrier family 1 member 2b.
  
 
 0.519
LOC115580745
Excitatory amino acid transporter 2-like.
  
 
 0.519
LOC115575078
Excitatory amino acid transporter 2-like.
  
 
 0.518
slc6a4
Solute carrier family 6 member 4.
  
  
 
0.512
LOC115581129
Sodium-dependent serotonin transporter-like.
  
  
 
0.509
LOC115590842
Excitatory amino acid transporter 5-like.
    
 0.492
LOC115592041
Excitatory amino acid transporter 5-like.
    
 0.492
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.