STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010033764Radial spoke head 10 homolog B. (508 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor 1.
   
 0.716
ENSSAUP00010018793
RAB guanine nucleotide exchange factor (GEF) 1, like.
   
 0.716
ENSSAUP00010028499
annotation not available
   
 0.716
ENSSAUP00010068935
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.686
ENSSAUP00010007540
Calcium channel, voltage-dependent, L type, alpha 1D subunit, b.
    
 
 0.678
rsph14
Radial spoke head 14 homolog.
    
 
 0.624
tsnaxip1
Translin associated factor X interacting protein 1.
    
 
 0.602
ENSSAUP00010049488
Cilia and flagella associated protein 99.
    
 
 0.558
cfap52
Cilia and flagella associated protein 52.
   
 0.528
ENSSAUP00010000266
Exportin 1 (CRM1 homolog, yeast) a.
    
 
 0.522
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.