STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010034307Bardet-Biedl syndrome 7. (720 aa)    
Predicted Functional Partners:
ENSSAUP00010024758
Bardet-Biedl syndrome 2.
  
 0.996
ENSSAUP00010009828
Tetratricopeptide repeat domain 8.
  
 0.994
bbs9
Bardet-Biedl syndrome 9.
    
 0.994
bbs4
Bardet-Biedl syndrome 4.
    
 0.993
bbs1
Bardet-Biedl syndrome 1.
   
 0.993
bbs5
Bardet-Biedl syndrome 5.
   
 0.954
lztfl1
Leucine zipper transcription factor like 1.
    
 0.951
LOC115576514
Kelch-like protein 41b.
   
 0.927
klhl40
Kelch like family member 40.
   
 0.927
LOC115572553
Kelch-like protein 40a.
   
 0.927
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.