STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115594804F-box only protein 40-like. (716 aa)    
Predicted Functional Partners:
ENSSAUP00010065018
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
  0.892
ENSSAUP00010011409
Fras1 related extracellular matrix 1a.
    
 0.779
LOC115591945
FRAS1-related extracellular matrix protein 1-like.
    
 0.779
skp1
S-phase kinase associated protein 1.
    
 0.770
cul1
Cullin 1.
    
 0.769
fras1
Fraser extracellular matrix complex subunit 1.
    
 0.766
LOC115589699
NEDD8-like.
   
  0.731
LOC115572664
NEDD8.
   
  0.731
gle1
GLE1 RNA export mediator.
    
 0.720
ENSSAUP00010015915
COMM domain containing 4.
    
  0.657
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.