STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115567521pre-B-cell leukemia transcription factor 2-like. (401 aa)    
Predicted Functional Partners:
hoxb1
Homeobox B1.
    
 0.859
ENSSAUP00010006799
Homeobox B1a.
    
 0.809
hoxc9
Homeobox C9.
    
 
 0.793
LOC115573654
Homeobox protein Meis2-like.
   
0.792
meis2
Meis homeobox 2.
   
0.792
meis1
Meis homeobox 1.
   
0.792
LOC115578437
Homeobox protein Meis1-like.
   
0.787
LOC115574963
Homeobox protein Hox-B8a.
    
 0.781
hoxc8
Homeobox C8.
    
 0.781
LOC115587997
Homeobox protein PKNOX1-like.
   
0.777
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.