STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115567902Transcription factor HES-7-like. (218 aa)    
Predicted Functional Partners:
fancc
FA complementation group C.
    
  0.678
fancf
FA complementation group F.
    
  0.678
ENSSAUP00010030897
FA complementation group G.
    
  0.678
fancl
FA complementation group L.
    
  0.678
fance
FA complementation group E.
    
  0.606
rpl10a
Ribosomal protein L10a.
    
  0.606
LOC115578888
Nuclear transport factor 2-like.
    
  0.583
nutf2
Nuclear transport factor 2.
    
  0.583
mrpl1
Mitochondrial ribosomal protein L1.
    
  0.583
ENSSAUP00010057959
annotation not available
    
  0.583
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.