LOC115569651 protein (Sparus aurata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115569651

Beta-1,4-galactosyltransferase 2-like. (352 aa)

Predicted Functional Partners:

fut8

0.888

pomgnt1

0.872

LOC115593456

0.871

st6gal2

0.871

b3gnt5

0.862

LOC115591245

0.862

ENSSAUP00010017485

0.861

LOC115572466

0.861

ENSSAUP00010066328

0.861

B3GALT1

0.860

Your Current Organism:

Sparus aurata

NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3GALT1	ENSSAUP00010017485	ENSSAUP00010044271	ENSSAUP00010017485	Beta-1,3-galactosyltransferase 1.	Fucosyltransferase 9a.	0.534
B3GALT1	LOC115569651	ENSSAUP00010044271	ENSSAUP00010036818	Beta-1,3-galactosyltransferase 1.	Beta-1,4-galactosyltransferase 2-like.	0.860
B3GALT1	LOC115572466	ENSSAUP00010044271	ENSSAUP00010054608	Beta-1,3-galactosyltransferase 1.	CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like.	0.861
B3GALT1	LOC115591245	ENSSAUP00010044271	ENSSAUP00010017457	Beta-1,3-galactosyltransferase 1.	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like.	0.848
B3GALT1	b3gnt5	ENSSAUP00010044271	ENSSAUP00010014621	Beta-1,3-galactosyltransferase 1.	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5.	0.848
ENSSAUP00010017485	B3GALT1	ENSSAUP00010017485	ENSSAUP00010044271	Fucosyltransferase 9a.	Beta-1,3-galactosyltransferase 1.	0.534
ENSSAUP00010017485	LOC115569651	ENSSAUP00010017485	ENSSAUP00010036818	Fucosyltransferase 9a.	Beta-1,4-galactosyltransferase 2-like.	0.861
ENSSAUP00010017485	LOC115572466	ENSSAUP00010017485	ENSSAUP00010054608	Fucosyltransferase 9a.	CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like.	0.533
ENSSAUP00010017485	fut8	ENSSAUP00010017485	ENSSAUP00010007537	Fucosyltransferase 9a.	Fucosyltransferase 8.	0.594
ENSSAUP00010066328	LOC115569651	ENSSAUP00010066328	ENSSAUP00010036818	UDP-galactose-4-epimerase.	Beta-1,4-galactosyltransferase 2-like.	0.861
LOC115569651	B3GALT1	ENSSAUP00010036818	ENSSAUP00010044271	Beta-1,4-galactosyltransferase 2-like.	Beta-1,3-galactosyltransferase 1.	0.860
LOC115569651	ENSSAUP00010017485	ENSSAUP00010036818	ENSSAUP00010017485	Beta-1,4-galactosyltransferase 2-like.	Fucosyltransferase 9a.	0.861
LOC115569651	ENSSAUP00010066328	ENSSAUP00010036818	ENSSAUP00010066328	Beta-1,4-galactosyltransferase 2-like.	UDP-galactose-4-epimerase.	0.861
LOC115569651	LOC115572466	ENSSAUP00010036818	ENSSAUP00010054608	Beta-1,4-galactosyltransferase 2-like.	CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like.	0.861
LOC115569651	LOC115591245	ENSSAUP00010036818	ENSSAUP00010017457	Beta-1,4-galactosyltransferase 2-like.	Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A-like.	0.862
LOC115569651	LOC115593456	ENSSAUP00010036818	ENSSAUP00010023572	Beta-1,4-galactosyltransferase 2-like.	Beta-galactoside alpha-2,6-sialyltransferase 1-like.	0.871
LOC115569651	b3gnt5	ENSSAUP00010036818	ENSSAUP00010014621	Beta-1,4-galactosyltransferase 2-like.	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5.	0.862
LOC115569651	fut8	ENSSAUP00010036818	ENSSAUP00010007537	Beta-1,4-galactosyltransferase 2-like.	Fucosyltransferase 8.	0.888
LOC115569651	pomgnt1	ENSSAUP00010036818	ENSSAUP00010029426	Beta-1,4-galactosyltransferase 2-like.	Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).	0.872
LOC115569651	st6gal2	ENSSAUP00010036818	ENSSAUP00010054149	Beta-1,4-galactosyltransferase 2-like.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2.	0.871