STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim9Tripartite motif containing 9. (728 aa)    
Predicted Functional Partners:
ENSSAUP00010012818
Neogenin 1b.
   
 
 0.805
dcc
DCC netrin 1 receptor.
   
 
 0.805
LOC115580493
Immunoglobulin superfamily DCC subclass member 4-like.
   
 
 0.803
LOC115568942
F-box/WD repeat-containing protein 11.
    
 0.802
igdcc3
Immunoglobulin superfamily DCC subclass member 3.
   
 
 0.637
LOC115578396
Immunoglobulin superfamily DCC subclass member 3-like.
   
 
 0.637
fndc1
Fibronectin type III domain containing 1.
   
 
 0.611
snap25
Synaptosome associated protein 25.
   
 
 0.584
LOC115580059
Synaptosomal-associated protein 25-A-like.
   
 
 0.584
trim44
Tripartite motif containing 44.
    
 
 0.546
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.