STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx1DEAD-box helicase 1. (740 aa)    
Predicted Functional Partners:
rtraf
RNA transcription, translation and transport factor.
   
 0.989
LOC115595779
tRNA-splicing ligase RtcB homolog.
   
 0.988
fam98b
Family with sequence similarity 98 member B.
    
 0.969
ENSSAUP00010017517
annotation not available
   
 
 0.961
c9h2orf49
Chromosome 9 C2orf49 homolog.
    
 0.941
LOC115574336
Protein FAM98B-like.
   
 
 0.884
psmc1
Proteasome 26S subunit, ATPase 1.
  
 
 0.832
cops3
COP9 signalosome subunit 3.
   
   0.828
psmc5
Proteasome 26S subunit, ATPase 5.
  
 
 0.818
dhx36
DEAH-box helicase 36.
  
 0.816
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.