STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010038852Nuclear transcription factor Y, beta a. (208 aa)    
Predicted Functional Partners:
nfya
Nuclear transcription factor Y subunit alpha.
   
 0.998
nfyc
Nuclear transcription factor Y subunit gamma.
   
 0.998
chrac1
Chromatin accessibility complex subunit 1.
   
 0.990
LOC115572201
Uncharacterized LOC115572201.
   
 0.984
ciita
Class II major histocompatibility complex transactivator.
     
 0.871
ENSSAUP00010020937
Polymerase (DNA directed), epsilon 2.
     
 0.826
LOC115584109
GATA-binding factor 2-like.
    
 
 0.797
GATA2
GATA binding protein 2.
    
 
 0.797
gata3
GATA binding protein 3.
    
 
 0.797
ENSSAUP00010059421
Polymerase (DNA directed), epsilon.
     
 0.796
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.