STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trps1Transcriptional repressor GATA binding 1. (1544 aa)    
Predicted Functional Partners:
ENSSAUP00010038852
Nuclear transcription factor Y, beta a.
    
 
 0.742
LOC115595244
Hepatocyte nuclear factor 3-beta-like.
    
 0.703
ENSSAUP00010000023
annotation not available
    
 0.691
SRF
Serum response factor.
    
 0.691
ENSSAUP00010020318
K(lysine) acetyltransferase 2B.
    
 0.684
ENSSAUP00010053308
K(lysine) acetyltransferase 2A.
    
 0.684
hdac7
Histone deacetylase 7.
    
 0.677
ENSSAUP00010015307
Histone deacetylase 9b.
    
 0.677
ENSSAUP00010031808
Histone deacetylase 4.
    
 0.677
hdac5
Histone deacetylase 5.
    
 0.677
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.