STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010039677Transient receptor potential cation channel, subfamily C, member 4a. (969 aa)    
Predicted Functional Partners:
trpc1
Transient receptor potential cation channel subfamily C member 1.
  
 
0.905
LOC115588639
Bone morphogenetic protein receptor type-2-like.
    
 0.702
bmpr2
Bone morphogenetic protein receptor type 2.
    
 0.702
lnx2
Ligand of numb-protein X 2.
   
 0.691
LOC115568921
Ligand of Numb protein X 2-like.
   
 0.691
ENSSAUP00010027224
PATJ crumbs cell polarity complex component.
   
 0.691
mpdz
Multiple PDZ domain crumbs cell polarity complex component.
   
 0.691
ENSSAUP00010057908
annotation not available
   
 0.691
lnx1
Ligand of numb-protein X 1.
   
 0.691
PRKCA
Protein kinase C alpha.
   
 0.662
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.