STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115596894Carbonyl reductase [NADPH] 1-like. (275 aa)    
Predicted Functional Partners:
LOC115585661
Prostaglandin E synthase 3-like.
   
 0.862
dcxr
Dicarbonyl and L-xylulose reductase.
    
 0.848
ENSSAUP00010043084
Dihydrofolate reductase.
  
 
 0.838
gsto1
Glutathione S-transferase omega 1.
   
 
 0.832
ptges
Prostaglandin E synthase.
     
 0.823
ENSSAUP00010046777
annotation not available
    
 0.823
ugt1a1
UDP glucuronosyltransferase family 1 member A1.
    
 0.823
ENSSAUP00010055309
UDP glucuronosyltransferase 5 family, polypeptide G2.
    
 0.823
ENSSAUP00010064544
annotation not available
    
 0.823
pts
6-pyruvoyltetrahydropterin synthase.
    
 0.822
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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