STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppibPeptidylprolyl isomerase B. (216 aa)    
Predicted Functional Partners:
fbl
Fibrillarin.
   
 
 0.918
tbl3
Transducin beta like 3.
   
 
 0.886
ENSSAUP00010030525
WD repeat domain 36.
   
 
 0.865
crtap
Cartilage associated protein.
   
 0.853
nat10
N-acetyltransferase 10.
  
   0.853
eed
Periodic tryptophan protein 2 homolog.
   
 
 0.849
utp4
UTP4 small subunit processome component.
   
 
 0.846
ENSSAUP00010010856
UTP6 small subunit processome component.
   
 
 0.845
utp15
UTP15 small subunit processome component.
   
 
 0.845
nol6
Nucleolar protein 6.
   
 
 0.841
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.