STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rundc3bRUN domain containing 3B. (460 aa)    
Predicted Functional Partners:
uvrag
UV radiation resistance associated.
    
 0.841
ENSSAUP00010062473
annotation not available
   
 
  0.826
ENSSAUP00010062478
annotation not available
   
 
  0.826
ap2s1
Adaptor related protein complex 2 subunit sigma 1.
    
   0.571
ENSSAUP00010042459
Solute carrier family 25 member 40.
      
 0.571
ENSSAUP00010016258
Carnitine O-octanoyltransferase.
      
 0.522
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.521
dmtf1
Cyclin D binding myb like transcription factor 1.
      
 0.521
vps45
Vacuolar protein sorting 45 homolog.
     
 0.514
rubcn
Rubicon autophagy regulator.
     
 0.512
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.