STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115593431Gap junction beta-1 protein-like. (254 aa)    
Predicted Functional Partners:
LOC115587455
Gap junction beta-2 protein-like.
  
  
0.765
LOC115592139
Occludin-like.
    
 
 0.553
ENSSAUP00010005338
Connexin 43.
  
 
0.548
CALML6
Calglandulin-like.
    
 
 0.490
rnmt
RNA guanine-7 methyltransferase.
      
 0.456
ENSSAUP00010046514
annotation not available
  
    0.453
ctnnb1
Catenin beta 1.
    
 
 0.452
PMP22
Peripheral myelin protein 22.
      
 0.449
LOC115572140
Claudin-1-like.
  
   
 0.424
LOC115590155
claudin-7-A.
  
   
 0.423
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.