STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115587317STI1-like protein. (533 aa)    
Predicted Functional Partners:
ENSSAUP00010065018
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
  0.769
sf3b1
Splicing factor 3b subunit 1.
   
 0.725
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.713
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.710
sf3b2
Splicing factor 3b subunit 2.
   
 0.710
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.707
ENSSAUP00010043211
Small nuclear ribonucleoprotein polypeptide F.
   
 0.705
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.701
sf3b4
Splicing factor 3b subunit 4.
    
 0.700
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.699
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.