STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115572280Hepatocyte nuclear factor 6-like. (484 aa)    
Predicted Functional Partners:
orc3
Origin recognition complex subunit 3.
    
 
 0.723
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region like.
   
 
  0.460
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
   
 
  0.460
ENSSAUP00010050348
Recombination signal binding protein for immunoglobulin kappa J region a.
   
 
  0.460
hnf1b
HNF1 homeobox B.
     
 0.421
LOC115597377
Hepatocyte nuclear factor 3-beta.
  
 
 
 0.418
CCNG2
Cyclin G2.
    
 
 0.406
LOC115592941
cyclin-G2-like.
    
 
 0.406
pdx1
Pancreatic and duodenal homeobox 1.
     
 0.401
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.