STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010044524annotation not available (367 aa)    
Predicted Functional Partners:
LOC115572800
Integrin beta-1-like.
    
 0.758
itgb1
Integrin subunit beta 1.
    
 0.754
ENSSAUP00010053420
Integrin, beta 6.
    
 0.750
itgb5
Integrin subunit beta 5.
    
 0.749
ENSSAUP00010056173
annotation not available
    
  0.746
ENSSAUP00010053523
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2.
   
 
0.734
itgb8
Integrin subunit beta 8.
    
  0.723
itga1
Integrin subunit alpha 1.
     
0.723
itga9
Integrin subunit alpha 9.
    
 0.718
ENSSAUP00010045830
Integrin, beta 4.
   
 0.697
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.