STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115573428Beta-arrestin-1-like. (404 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
  0.981
RHO
Rhodopsin.
   
 0.914
ENSSAUP00010043612
Rhodopsin.
   
 0.914
LOC115583901
Green-sensitive opsin.
   
 0.878
ENSSAUP00010048319
annotation not available
   
 0.878
ENSSAUP00010046450
Myosin IIIA.
   
 0.867
ENSSAUP00010066107
Myosin IIIB.
   
 0.867
ENSSAUP00010019366
annotation not available
    
 0.863
LOC115573509
Clathrin heavy chain 1.
    
 0.863
cltcl1
Clathrin heavy chain like 1.
    
 0.863
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.