STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf7Ring finger protein 7. (112 aa)    
Predicted Functional Partners:
eloc
Elongin C.
   
 0.997
ubxn7
UBX domain protein 7.
    
 0.995
skp1
S-phase kinase associated protein 1.
   
 0.991
cul2
Cullin 2.
    
 0.991
CUL5
Cullin-5.
    
 0.989
LOC115567385
Cullin-5-like.
    
 0.989
ddb1
Damage specific DNA binding protein 1.
    
 0.977
skp2
S-phase kinase associated protein 2.
    
 0.977
LOC115568942
F-box/WD repeat-containing protein 11.
    
 0.976
ENSSAUP00010060187
Elongin B.
   
 0.973
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.