STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pex16Peroxisomal biogenesis factor 16. (343 aa)    
Predicted Functional Partners:
ENSSAUP00010035447
Peroxisomal biogenesis factor 19.
    
 0.984
pex3
Peroxisomal biogenesis factor 3.
    
 0.920
pex14
Peroxisomal biogenesis factor 14.
    
 0.871
pex12
Peroxisomal biogenesis factor 12.
     
 0.862
pex13
Peroxisomal biogenesis factor 13.
     
 0.860
ENSSAUP00010058363
Family with sequence similarity 185 member A.
    
 0.840
abcd3
ATP binding cassette subfamily D member 3.
     
 0.837
pex2
Peroxisomal biogenesis factor 2.
     
 0.823
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 
 0.821
LOC115586701
Peroxisomal membrane protein 11A-like.
   
 
 0.821
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.