STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010047168Procollagen, type V, alpha 1. (1306 aa)    
Predicted Functional Partners:
col6a2
Collagen type VI alpha 2 chain.
  
 
0.556
ENSSAUP00010062559
Collagen, type VI, alpha 1.
  
 
0.549
LOC115583286
Complement C1q subcomponent subunit C-like.
    
 
0.541
COL22A1
Collagen type XXII alpha 1 chain.
  
 
0.538
lig1
DNA ligase 1.
    
 0.518
ENSSAUP00010045830
Integrin, beta 4.
   
 0.510
ENSSAUP00010053420
Integrin, beta 6.
    
 0.510
itgb8
Integrin subunit beta 8.
    
  0.495
ENSSAUP00010056173
annotation not available
    
  0.482
ENSSAUP00010069114
annotation not available
   
  0.464
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.