STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr11WD repeat domain 11. (1243 aa)    
Predicted Functional Partners:
trappc11
Trafficking protein particle complex 11.
   
    0.817
ENSSAUP00010045036
Chromosome 17 open reading frame 75.
    
 
 0.810
fam91a1
Family with sequence similarity 91 member A1.
     
 0.787
ENSSAUP00010002838
N-alpha-acetyltransferase 40-like.
    
   0.775
ubxn7
UBX domain protein 7.
   
   0.727
ENSSAUP00010024767
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
    
  0.659
ENSSAUP00010016968
5-methyltetrahydrofolate-homocysteine methyltransferase.
   
 
  0.651
ENSSAUP00010000104
Ras homolog family member H.
    
  0.650
rhoq
Ras homolog family member Q.
    
  0.650
chmp6
Charged multivesicular body protein 6.
    
 
 0.638
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.