STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115582438uracil-DNA glycosylase-like. (303 aa)    
Predicted Functional Partners:
ENSSAUP00010001318
Nth-like DNA glycosylase 1.
   
 0.886
pcna
Proliferating cell nuclear antigen.
  
 
 0.822
apex1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
  
 0.811
ddb1
Damage specific DNA binding protein 1.
    
 
 0.773
apex2
Apurinic/apyrimidinic endodeoxyribonuclease 2.
  
 0.767
LOC115583996
DDB1- and CUL4-associated factor 1-like.
    
 
 0.748
DCAF1
DDB1 and CUL4 associated factor 1.
    
 
 0.748
LOC115570929
Probable endonuclease 4.
   
 
 0.699
LOC115578930
Replication protein A 32 kDa subunit-like.
   
 
 0.620
rpa2
Replication protein A2.
   
 
 0.620
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.