STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115597454La-related protein 1B-like. (1107 aa)    
Predicted Functional Partners:
ENSSAUP00010062777
annotation not available
   
 
 0.759
DHX15
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 
 0.710
LOC115590162
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like.
   
 
 0.710
ENSSAUP00010002988
Poly A binding protein, cytoplasmic 1 b.
   
 
 0.663
LOC115567413
Polyadenylate-binding protein 1-like.
   
 
 0.663
LOC115566285
Polyadenylate-binding protein 4-like.
   
 
 0.663
LOC115585352
Embryonic polyadenylate-binding protein-like.
   
 
 0.663
trub1
TruB pseudouridine synthase family member 1.
   
 
 0.604
ENSSAUP00010015855
Eukaryotic translation initiation factor 4, gamma 2b.
   
 
 0.591
LOC115571959
Eukaryotic translation initiation factor 4 gamma 1-like.
   
 
 0.591
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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