STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plrg1Pleiotropic regulator 1. (510 aa)    
Predicted Functional Partners:
cwc15
CWC15 spliceosome associated protein homolog.
   
 0.999
cdc5l
Cell division cycle 5 like.
   
 0.999
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.999
prpf19
pre-mRNA processing factor 19.
   
0.999
ENSSAUP00010063646
Catenin, beta like 1.
   
 0.997
snw1
SNW domain containing 1.
   
 
 0.992
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.992
bud31
BUD31 homolog.
   
 
 0.992
yju2
YJU2 splicing factor homolog.
    
 
 0.991
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.991
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.