STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BCL11BB-cell lymphoma/leukemia 11B-like. (839 aa)    
Predicted Functional Partners:
ENSSAUP00010046194
annotation not available
    
  0.844
RBBP7
Histone-binding protein RBBP4-like.
    
 0.602
LOC115580212
Histone-binding protein RBBP7.
    
 0.602
LOC115597728
Histone-binding protein RBBP4.
    
 0.602
ENSSAUP00010046198
annotation not available
    
  0.588
ENSSAUP00010053745
Phosphoribosylglycinamide formyltransferase.
   
 
  0.581
LOC115587574
Thioredoxin domain-containing protein 3 homolog.
    
 0.578
bard1
BRCA1 associated RING domain 1.
    
  0.577
YTHDC2
YTH domain containing 2.
    
  0.548
LOC115567700
Cytochrome b5 reductase 4.
    
  0.511
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.