STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010050542Rotatin. (2092 aa)    
Predicted Functional Partners:
ENSSAUP00010006797
Si:ch211-131k2.3.
     
 0.850
pla2g4a
Phospholipase A2 group IVA.
   
 
 0.842
got2
Glutamic-oxaloacetic transaminase 2.
    
 0.693
ENSSAUP00010012103
annotation not available
    
 
 0.667
pla2g6
Phospholipase A2 group VI.
   
 0.650
cat
Catalase.
    
 0.632
LOC115595146
Tyrosine 3-monooxygenase-like.
     
 0.612
th
Tyrosine hydroxylase.
     
 0.612
ptges2
Prostaglandin E synthase 2.
     
 0.605
ENSSAUP00010021830
annotation not available
      
 0.595
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.