STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115571764Thyroid hormone receptor alpha. (413 aa)    
Predicted Functional Partners:
med1
Mediator complex subunit 1.
    
 0.918
rxra
Retinoid X receptor alpha.
    
0.869
LOC115567545
Retinoic acid receptor RXR-beta-A-like.
    
0.865
LOC115591884
Retinoic acid receptor RXR-gamma-B.
    
0.865
RXRB
Retinoic acid receptor RXR-beta-A.
    
0.865
ENSSAUP00010000647
Nuclear receptor corepressor 2.
    
 0.861
ncor1
Nuclear receptor corepressor 1.
    
 0.861
med24
Mediator complex subunit 24.
    
  0.859
hdac3
Histone deacetylase 3.
    
 0.855
med17
Mediator complex subunit 17.
    
  0.843
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.