STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115593165AN1-type zinc finger protein 5-like. (233 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.826
ENSSAUP00010007617
annotation not available
    
 0.824
ENSSAUP00010007645
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.824
ENSSAUP00010019085
annotation not available
    
  0.736
ENSSAUP00010062713
Ribosomal protein S27a.
    
  0.736
ENSSAUP00010035012
RAB21, member RAS oncogene family.
   
 
 0.647
LOC115572968
ubiquitin-60S ribosomal protein L40-like.
    
 0.642
ENSSAUP00010019058
annotation not available
    
 0.642
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.642
LOC115584824
ADP-ribosylation factor-binding protein GGA3-like.
    
 0.628
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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