STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBSPONSomatomedin B and thrombospondin type 1 domain containing. (261 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.881
nup93
Nucleoporin 93.
   
 0.848
palb2
Partner and localizer of BRCA2.
  
 0.837
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
  
 0.837
coasy
Coenzyme A synthase.
  
 
 0.810
hsdl2
Hydroxysteroid dehydrogenase like 2.
  
 0.801
med23
Mediator complex subunit 23.
    
 0.800
med14
Mediator complex subunit 14.
   
 0.796
med17
Mediator complex subunit 17.
    
 0.788
med10
Mediator complex subunit 10.
    
 0.786
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.