STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
p3h4Prolyl 3-hydroxylase family member 4 (inactive). (425 aa)    
Predicted Functional Partners:
p3h3
Prolyl 3-hydroxylase 3.
  
0.826
ppib
Peptidylprolyl isomerase B.
   
 0.821
p3h2
Prolyl 3-hydroxylase 2.
  
0.817
p3h1
Prolyl 3-hydroxylase 1.
   
0.809
ppic
Peptidylprolyl isomerase C.
   
 0.785
ENSSAUP00010036764
annotation not available
    
  0.632
ticrr
TOPBP1 interacting checkpoint and replication regulator.
   
 0.632
ENSSAUP00010034898
annotation not available
    
 0.577
ENSSAUP00010052453
Collagen, type XXVII, alpha 1b.
    
 0.577
ENSSAUP00010055320
annotation not available
    
 0.577
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.