STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttlTubulin tyrosine ligase. (410 aa)    
Predicted Functional Partners:
LOC115587354
Enhancer of mRNA-decapping protein 3-like.
    
 
 0.859
LOC115580748
Enhancer of mRNA-decapping protein 3-like.
    
 
 0.859
LRRC49
Leucine rich repeat containing 49.
    
 0.852
tpgs2
Tubulin polyglutamylase complex subunit 2.
   
 0.845
nudt12
Nudix hydrolase 12.
   
  0.836
nicn1
Nicolin 1.
   
 0.814
tpgs1
Tubulin polyglutamylase complex subunit 1.
    
 0.811
ENSSAUP00010029726
Decapping mRNA 2.
    
 
 0.735
LOC115595325
mRNA-decapping enzyme 1B-like.
    
 
 0.722
tbc1d19
TBC1 domain family member 19.
   
 
 0.713
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.