STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSAUP00010052000Arginine-glutamic acid dipeptide (RE) repeats b. (1150 aa)    
Predicted Functional Partners:
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region like.
    
  0.806
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
  0.806
ENSSAUP00010050348
Recombination signal binding protein for immunoglobulin kappa J region a.
    
  0.806
ENSSAUP00010015498
FAT atypical cadherin 2.
    
 0.770
fat1
FAT atypical cadherin 1.
    
 0.770
LOC115586138
Photoreceptor-specific nuclear receptor-like.
    
 0.722
nr2e1
Nuclear receptor subfamily 2 group E member 1.
    
 0.722
NR2E3
Photoreceptor-specific nuclear receptor-like.
    
 0.722
fat3
FAT atypical cadherin 3.
    
 0.719
ENSSAUP00010028155
FAT atypical cadherin 3b.
    
 0.719
Your Current Organism:
Sparus aurata
NCBI taxonomy Id: 8175
Other names: Aurata aurata, S. aurata, Sparus auratus, gilthead bream, gilthead seabream, silver seabream
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.